miROrtho: the catalogue of animal microRNA genes

• A known miRNA family (e.g. "mir-204")
• A list of known miRNA families (e.g. "mir-204, mir-205")
• All miRNA genes in one genome (e.g. "Dere")
• New miRNA groups (e.g. "22015")
• "%" is the wildcard character

miROrtho contains predictions of precursor miRNA genes covering several animal genomes combining orthology and a Support Vector Machine. We provide homology extended alignments of already known miRBase families and putative miRNA families exclusively predicted by our SVM and orthology pipeline.

UCSC tracks for human, mouse and fly:

• Human miRNA track (hg18), Human miRNA track (hg19)
• Mouse miRNA track (mm8), Mouse miRNA track (mm9)
• Fly miRNA track (dm2), Fly miRNA track (dm3)

If you find these data helpful for your work you may want to cite:

Gerlach D, Kriventseva EV, Rahman N, Vejnar CE, Zdobnov EM. miROrtho: computational survey of microRNA genes. Nucleic Acids Research, 2009